PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3407 PGA1_c34600 arginine biosynthesis bifunctional protein ArgJ (409 amino acids)

SeqID: GFF3407 PGA1_c34600 arginine biosynthesis bifunctional protein ArgJ
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584772: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3407 PGA1_c34600 arginine biosynthesis bifunctional protein ArgJ
MALPRSPLAPDHFPKLPQIAGVRFASAAAGVKYKNRTDVMLAVMDPGSAVAGVFTRSATR
SAPVLDCQAKLASNDNHTAHGAAILVNSGNSNAFTGHYGQTSVAEITRTVADITGIPAAR
VFTASTGVIGEPLPHDRIVSQIATLNDGLVATAIEDAAEAIMTTDTFAKGAGATIEVGGK
TVSIAGIAKGSGMIAPDMATMLVYIFTDAQIAQNDLQVLLSQICDRTFNCITVDSDTSTS
DSLMLCASGASGIDVTGNTDFALALENVMLDLSHQVVRDGEGATKFVEIQVTGAMNDHDA
KVHGLSIANSPLVKTAIAGEDPNWGRVVMAIGKSGAAADRDKLSISFGEVLVAEKGWVSP
DYKETDGAAEMAKPEIVIKVDLGLAEGKSTVWTCDLTHQYISINADYRS