PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3421 FitnessBrowser__Marino:GFF3421 (562 amino acids)

SeqID: GFF3421 FitnessBrowser__Marino:GFF3421
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3421 FitnessBrowser__Marino:GFF3421
MTQDKNQDKRRKYSAPVVDGIGKSASRAMLRAVGFTDEDFKKPQIGIASTWSNLTPCNMH
INQLAEESAAGADEAGGKSLIFNTITISDGIANGTEGMKYSLVSREVIADSIETVAGCEG
FDGLVAIGGCDKNMPGCMMGLARLNRPSVFVYGGTIMPGENHTDIISVFEAVGAHARGDL
DLIEVKQIEETAIPGPGSCGGMYTANTMASAIEAMGMSLPGSSAQNAVSETKAEDCRGAG
AAVLNLLEKDIKPSDIMTRKAFENAITVVIALGGSTNAVLHLLAMASTVGVDLELEDFVE
IGKRVPVLADLRPSGHYMMSELVAIGGIQPLMKMLLDRGLLHGDCLTVTGQTLAENLADV
DPYPEGQDIIHAFDNPIKADSHLRILFGNLAPTGAVAKITGKEGTHFTGRARVFHSEEEA
QERILDGTVVAGDVLVIRYEGPKGGPGMREMLSPTSAIMGKGLGSDVALITDGRFSGGSH
GFVVGHITPEAAEGGPIALVEDGDTITIDAVSNRIELDVSDQELERRRQAWQAPPPRFTR
GTLAKYSRTVSSASKGAVTDLP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory