PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF343 FitnessBrowser__WCS417:GFF343 (510 amino acids)

SeqID: GFF343 FitnessBrowser__WCS417:GFF343
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF343 FitnessBrowser__WCS417:GFF343
MTALNLIPGQLSLAQLRAIYQQPVTLSLDDSATAQIEASVACVEQILAENRTAYGINTGF
GLLASTRIASEDLENLQRSLVLSHAAGVGEPISDALVRLVMVLKVNSLSRGFSGIRRQVI
DALIALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGEWLEATEALKVAG
LTPLTLAAKEGLALLNGTQVSTAYALRGLFEGEDLFAGALACGALTVEAVLGSRSPFDAR
IHAARGQRGQIDSAAAYRHLLGESSQVSQSHQNCDKVQDPYSLRCQPQVMGACLTQFRQA
AEVLVVEANAVSDNPLVFAAQGDVISGGNFHAEPVAMAADNMALAIAEIGSLSERRISLM
MDKHMSQLPPFLVGNGGVNSGFMIAQVTAAALASENKALAHPHSVDSLPTSANQEDHVSM
APAAGKRLWEMAENTRGVLAVEWLAACQGLDLREGLKTSPALEKARGILRGKVAFYEKDR
FFAPDINAASELLASRCLNELVPANLLPSL