PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3450 FitnessBrowser__psRCH2:GFF3450 (469 amino acids)

SeqID: GFF3450 FitnessBrowser__psRCH2:GFF3450
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1176075: Hypothetical sodium-dependent transporter HI1690]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3450 FitnessBrowser__psRCH2:GFF3450
MSDKTSLAAGTFAGARARIQDNASRGLWSSRWVFFLAATGSAVGLGNIWKFPYVTGQNGG
GAFVLVYLACILLIGIPLLMTEVMIGRRGRANPDGAVARLAREAGASSRWRVVGWLGGLT
GFLILSFYLVVAGWALAYVPATFSGGFAGVSGEASGELFGALLADPLRLVVCATLVLAAT
MLIVGFGVRGGLERSLRFLMPGLFVLMLVLVVYAAIEGEFAQALQFLFVPDFSALTAQSV
LIALGHAFFTLSLGCGAMMVYGSYLPEGTSIAKTSILVALADTAVALLAGLAIFPLVFGN
GLEPGAGPGLIFVTLPIAFGQMPLGQVVGGLFFIMLVIAALTSAISLSEPSIAWLTERFR
ISRTKAVLGSGLVLWLLSLGSVFSFNHWADYQLFGKTFFDTLDYLTTNWLMPLGGLGTVL
FTGWVLQRQVVSEAIGIRNAGLFQAWWNLLRYGTPVAIVLVFLNLLGLI