PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3462 FitnessBrowser__Phaeo:GFF3462 (277 amino acids)

SeqID: GFF3462 FitnessBrowser__Phaeo:GFF3462
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595223: shikimate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3462 FitnessBrowser__Phaeo:GFF3462
MNDTRIPLAGVIGSPVAHSRSPLVHGHWLRTYGIAGHYVPLHVEPGQLEEVVRSLPKMGF
VGANITIPHKEQIMEIADQVTDRATLIGAANTLIFRPDGSILADNTDGYGFITNLHQAAP
DWDPATGPAVVFGAGGASRAVIASLLEAGVPEILLSNRTRERADQFRSEFGSRIQVVDWV
QVGNVIEQAALLVNTTSLGMVGKPRLRVPLDGLRSSTVVTDLVYTPLKTDMLQWAEDIGC
TTVDGLGMLLHQAVPGFERWFGKRPEVDAATREAALA