PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3488 FitnessBrowser__WCS417:GFF3488 (267 amino acids)

SeqID: GFF3488 FitnessBrowser__WCS417:GFF3488
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3488 FitnessBrowser__WCS417:GFF3488
MLDSQQILAAAANLDRAERSREQVRQFSLDYPGITIEDAYAIQRAWVAQKIKDGRTLKGH
KIGLTSRAMQVSSNITEPDYGALLDDMFFDEGSDIPFERFIVPRVEVELAFILGKPLKGP
NCTVFDVLDATEWVIPALEIIDARIQQVDPQTNATRKVFDTISDNAANAGVVLGGRAVRP
TEIDLRKVPAVLYRNGVIEESGVSAAVLNHPAKGVAWLANKLAPHDVTLLPGQIILGGSF
TRPVAARPGDTFHVDYDLLGSIACRFV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory