PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3565 FitnessBrowser__WCS417:GFF3565 (546 amino acids)

SeqID: GFF3565 FitnessBrowser__WCS417:GFF3565
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3565 FitnessBrowser__WCS417:GFF3565
MRDYDSAVTSFNYRQLATQDLHGELAAMNACIECCDRHALGDAVALYCETPDGRATHHTF
SELQAHAARFGNFLREQGVKPGERVAGLMPRTVELLIAILGTWRIGAVYQPLFTAFGPKA
IEQRLGCSEARWIVTDAHNRPKLDDVIDCPRIIVTGAGPRNPDDYDFWTVLDRQQADCVP
ELLDASAPFLLMCTSGTTGPAKPLEVPLSAILAFKGYMRDSIDLREDDHFWNLADPGWAY
GLYYAVTGPLACGRATLFYDGPFAVDSTCRIIAKYAITNLAGSPTAYRLLIAAGAAFADT
VRGRLRVISSAGEPLNPQVIRWFADELGVVIHDHYGQTEIGMVLCNHHGLRHPVREGSAG
YAVPGYRIVVLDDAHRELPPGRPGVLAVDRERSPLCWFEGYFGMPTQAFVDRYYLSGDIV
ELNDDGSISFVGRNDDVITTSGYRVGPFDVESALIEHPAVVEAAVIGKPDPQRTELIKAF
VVLNSQSLPSTELAEVLRLHVRQRLAAHAYPREIEFVEHLPKTPSGKLQRFILRNQEIAK
QQAFDT