PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3660 FitnessBrowser__WCS417:GFF3660 (334 amino acids)

SeqID: GFF3660 FitnessBrowser__WCS417:GFF3660
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6226636: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3660 FitnessBrowser__WCS417:GFF3660
MTRTLLALALLLAALLAGVAIGETAISPQVVLQVLANKLWAASYVLDPIDEGVVWNYRLT
RALVAAACGAGLATCGVILQSLLRNPLADPYLLGISAGASTGAVLVALIGVGGGLISLSA
GAFVGAMAAFALVILLARASGSASGTGQIILAGIAGSQLFNALTAFLITKSASSEQARGI
LFWLLGNLSGVRWPSVWLAVPVAVAGLAVCLWHRRALDAFTFGSDSAASLGIPVRRVQFV
LVGCAALVTAVMVSIVGSIGFVGLVIPHAVRLLLGTGHSRLLPASALGGALFLIAADVLS
RTLIKGQVIPVGVVTALVGAPVFALILIGRRNAR