PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3695 FitnessBrowser__WCS417:GFF3695 (385 amino acids)

SeqID: GFF3695 FitnessBrowser__WCS417:GFF3695
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600583: probable peptidic bond hydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3695 FitnessBrowser__WCS417:GFF3695
MNSRELLAQLVRFDTTSRESNLALIDFVRTYLQDHGVACALVYNEHKSKANLLATIGPAE
VPGIVLSGHTDVVPVEGQRWSVAPFDLTEKDGKLYGRGTADMKGYIACVLACVPALVKAS
LRMPVHIALSYDEEVGCLGVRSLIERFHEQPVKPLLCVIGEPTELKPVLGHKGKLAMRCH
VHGAACHSAYAPAGVNAIEYAACLISELVRLGETLKAPQHLDQRFAPAFSTVQTGLINGG
KALNIVPQDCSFDFEVRSLPAQDPWQVARQLQAYAEQTLLPAMRAVSEQSAISLSELSSY
PGLATSLESQAAEWVAQFCGSREFATVAFGTEGGLFDQAGIPTVVCGPGSMEQGHKPDEF
ISVAQLQACDRMLARVLEFVSQPAN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory