PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3700 FitnessBrowser__WCS417:GFF3700 (505 amino acids)

SeqID: GFF3700 FitnessBrowser__WCS417:GFF3700
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3700 FitnessBrowser__WCS417:GFF3700
MTFDWNYMFGLLGDAEFWRATWTVIKLSTLTWVLSIGLGFLLALAKQSRHGLLSVPARGY
IWLFRSLPLLVLLIFIYNLPQALPGTSAILADPFWSGLLALVICETAYVAEIHRGGLLSI
PKGQAEAARALGLKFFGTQWRVVIPQALRVALPSLANEYISIVKLTSLVSVISLTEILMV
GQRLYSQNFLVIETMAAVAFFYVFIVTVFDFLLKRLERFLDVNERNVSRVPDAAVLALAS
QQRTALARPATHGEPALQAARLHKAYNDIEVLGSVNLQIQPGEVVSVIGPSGSGKTTLIR
LLNGLEQLDNGEIRINGQPFIHLNKVGAQKPQYIEHAEHRLNIGMVFQSFNLFPHLTVLD
NLLMAPKYHRLGATAELKQQAYALLHKVGMLDHAWKYPHQLSGGQQQRVAIARALMMRPQ
IMLFDEPTSALDPEKVNEVLQVIEALAEEGITMVIVTHEMNFAFKVSDRIVFMEKGSVVC
DDTPGALRSGHNPRVEAFLKDVSLA