PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3717 FitnessBrowser__psRCH2:GFF3717 (539 amino acids)

SeqID: GFF3717 FitnessBrowser__psRCH2:GFF3717
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 17367880: "Oligo-1,6-glucosidase"]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3717 FitnessBrowser__psRCH2:GFF3717
MRPLWYRNAAIYQIDPTLFRDSNGDGCGDLRGITERLDYIRGLGCTAVWLMPFYQSPFED
AGYDISDHLQVDERFGDLADIVALLEKAEELGLHVIIELVVQHTSIQHKWFQEARRDRNS
PYRDYYIWADEPDDFMEPIFPTVEDSIWTWDEEAGQYYRHLFYKHEPDLDLTNPRVIHEI
ERIMSFWLRLGVSGFRIDAAVHMVRQAGGGELEKGYWLLEHMRDFVTMRRPETVLLGEID
TDPDKYVEYFGDEADRVTLLLDFWTNNHLFLSLARQQAEPLVRALNSQPLPPSHSQYALW
IRNHDELSLDRLEEDERNEVMDTFAPDENMRAYNRGIRRRLAPMLDGDERRIAATHALLF
SLPGTPIIRYGEEIGMGDDLDRPERLAVRTPMQWSNEPNAGFSCTKGELAAPVIDEGPFT
YEKINVFAQTLRSDSLMARTGNMIRTRIGLREIGIGKRTTVEVNDPAVFAIRHDNGSTVL
MLVNLADQETTVEITDDDLQDMVDVLADCDYDQPEGTPLKIRLGPYGYRWLRRKQQLFG