PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3737 FitnessBrowser__psRCH2:GFF3737 (857 amino acids)

SeqID: GFF3737 FitnessBrowser__psRCH2:GFF3737
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

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Search CDD (the Conserved Domains Database, which includes COG and superfam)

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Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3737 FitnessBrowser__psRCH2:GFF3737
MALFKRTAKDSGVLNPASTRTKPAGVTIKPLLGGLASGLIGLGAAAALLWLGLQNAQQQQ
QAQLSQAWGQSQAGALQQALRQQRAETQALVDRQQLADVLRGDAERRRDAEERLLQLPGV
VDAHLNIRGRAVPDTNRPGPLNFAALDLLQRVEAGQSPAPEAYKVDNRWLLYSAVPLRAE
GQQAIRGTLLLVSDLERLFATLPALPAEAGQLRLTQQFSGTQEQLLLQRGAPAEGATAVT
LSSGNANWKLVYLPGSEAAQATLSPLLLIGAALLALAGMLIGLQLVLGSQQRKLREDVMQ
ISRLLQELSTGKTIQVPALSLPVLDALARNMVRLPVRPAGPAPTQAPAAAPAVRPAKPTE
YVDPRLPETDILDIDILDEDQDIFGLDTKERETAMSSAKAPNLPASIFRAYDIRGVVGDS
LTTETAYWVGRAIGSESLAKGEPNVSVGRDGRLSGPELVQHLIQGLLDSGCDVSDIGMVP
TPVLYYAANILAGKSGVMLTGSHNPPDYNGFKIVIAGDTLANEQIQTLRKRIENNDLSSG
VGKVEQVDVLERYFQQIRSDIAMAKPMKVVVDCGNGVAGVIAPRMIEALGCTVIPLYCDV
DGNFPNHHPDPGKPENLVDLIAKVKSEKADLGLAFDGDGDRVGVVTNAGTMIYADRLLML
FAKDVVSRNPGADIIFDVKCTRRLTPLISGYGGRPVMWKTGHSLIKKKMKESGALLAGEM
SGHIFFKERWFGFDDGIYSAARLLEILSQDKRDAEQVFAAFPCDISTPEINITVTEESKF
TIMDALQRDAQWGEANLITLDGVRVDYPKGWGLIRASNTTPVLVLRFEADSEEELSRIQD
VFRAQLLNVAPDLKLPF