PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF376 Psest_0377 galactarate dehydratase (521 amino acids)

SeqID: GFF376 Psest_0377 galactarate dehydratase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF376 Psest_0377 galactarate dehydratase
MSETVQLIPHQDSPRCIRLNEADNVAVVVNDGGVPVGAQFEGGLVTVEAVPQSHKVALVD
IGEGEPVRRYGQIIGYALEPIRCGSWVKETQLKMPSAPPLESLPRATAVPDKLAPLDGYT
FEGFRNSDGTVGTRNILGISTTVQCVTGVLEHAVKRIRDELLPKYPNVDDVVALTHSYGC
GVAINARDAYIPIRTVRNLARNPNLGGEALVISLGCEKLQAEQVMHEGDPSVDLREPWLY
RLQESNSGFGEMIEQIMALAETRLKKLDQRRRETVPASELILGMQCGGSDAFSGITANPA
LGYAADLLVRAGATVMFSENTEVRDAVYMLTARAETPEVADALIAEMDWYDRYLERGAAD
RSANTTPGNKKGGLSNIVEKSLGSIVKSGSGAISGVVGPGGRVARKGLIFCATPASDFVC
GTLQLAAGMNLHVFTTGRGTPYGLAMAPVVKVATRTELAERWPDLIDIDAGRIASGRASI
EELGWELFHYYLDVASGRRKTWAEQHRLHNDLVLFNPAPIT