PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3768 FitnessBrowser__psRCH2:GFF3768 (726 amino acids)

SeqID: GFF3768 FitnessBrowser__psRCH2:GFF3768
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 585455: Malate synthase G]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3768 FitnessBrowser__psRCH2:GFF3768
MTERVTLGRLQVAANLQRFIEDEVLPGSGIEAAAFWQGLDALVHDLAPKNRELLAERDRM
QVELDTWHKANPGPIKDMAAYRAFLESIGYLLPVPGEVKIETANVDSEIATQAGPQLVVP
IMNARYALNAANARWGSLYDALYGTDAISEEGGAQKGPGYNEVRGAKVIAYARNFLDQAA
PLAEGSHADATAYRVQDGQLKVTLENGSVTGLAQPEKFVGFQGEAVEPKAVLLKNNGLHV
EIQIDPNSPIGQTDAAGVKDLLVESAVSTILDCEDSVAAVDADDKVLAYRNWLGIVQGTL
SEEVAKGSSSFVRRLNPDREYSAPNGGELKLHGRSLLFIRNVGHLMTNPAILLEDGREIP
EGIMDGVFTSLIAKHDLQRKGNSRTGSVYIVKPKMHGPKEVAFADELFGRVEELIGVPRY
TLKMGIMDEERRTSANLKACIAAAKHRVAFINTGFLDRTGDEMHTCMEAGPVLRKGDMKS
TPWIQSYERNNVLVGLACGLRGKAQIGKGMWAMPDLMAAMLEQKIGHPKSGANTAWVPSP
TGATLHALHYHQVNVQAVQSELEKIDLAAERDQLLNDLLSIPVVAEDKWSAEEKQQELDN
NCQGILGYVVRWVEQGVGCSKVPDIHNVGLMEDRATLRISSQHIANWLHHGVVSREQVQE
TLQRMAKVVDQQNAGDPLYRAMSSDYTQSIAFQAASDLVFKGREQPAGYTEPLLHAWRQR
YKASQA