PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3828 FitnessBrowser__Phaeo:GFF3828 (551 amino acids)

SeqID: GFF3828 FitnessBrowser__Phaeo:GFF3828
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3828 FitnessBrowser__Phaeo:GFF3828
MGDHKTAAPTVGEALVEELAARGVQHVFGIPGVHTVELYRGLGRSDLRHITPRHEQGAGF
MADGYARVSGRPGVAFVITGPGLTNTLTPMAQARADSVPMLVVSGVNESGSLGHGMGHLH
ELPDQHALAKMVALKSEHVAAPEQLTPALDQAFAPIAGAALSRPGPTHVQIPLDVAGSAA
RDGDGQESAPTGEQDRTVSPADLAALMQRLTAAERPVILAGGGARFCADQLRQLAEYLGA
PVVQTVNARGVMFDHPLSVPASPSLGSVRELIEAADMVLALGTELGPTDYDMYATGTMPQ
MPGLIRIDLCADQLARHRAELTVQGDVAAVLSAALAEWKPDVRSTTDWGIGLAEQTRTAA
WDEIGESYRAQVMVLNALRAAVPGAIVVGDSAQPIYAGNLYYDHDRPGGWFNAATGYGAL
GYGIPAAIGAAVAAPETPVICITGDGGAQFSLPEIMTAVDEALSITFIVWNNHGYQEIAR
SMQDVGVPVVGCDPTPPDFAATARSFGISHRAVSADPQEVAVALHSAATETGPRMIEITT
PKFLPTLATKD