PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3829 FitnessBrowser__Phaeo:GFF3829 (395 amino acids)

SeqID: GFF3829 FitnessBrowser__Phaeo:GFF3829
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3829 FitnessBrowser__Phaeo:GFF3829
MRMTDVTRRLAGLGGAKWEVHLTAREMIAAGADIIEMTIGEPDVPTPEALMQTAGAAMMA
GRTGYSDGRGEANLRQTLAERYSASTGRAIGPDNVLCFPGTQTALYAVLMGVAEHGDEVL
VGDPMYATYEGVIRASGADMVPVPLRPEHGFRMQANDIAEKITPRSRAILLTTPHNPTGS
ILTVEDLDAIGRLADVHDLWIISDEVYEQLVFDAAEFVSPLARAAFADRVIVVSSISKSH
AAPGFRSGWCIASKAFCDGLLPLSETMLFGNQPFIADMTEQAVREGSPVAEGMRARFAAR
AAKLAERLHRDTALRVHSPEAGMFAMINVAATGLDGDAYAQDLLHSAGVAVMPGSSFGES
LRGWVRVALTIEDDAFDRALTRIVDHANRTSTEVA