PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3831 PGA1_262p02350 histidine transport ATP-binding protein HisP (281 amino acids)

SeqID: GFF3831 PGA1_262p02350 histidine transport ATP-binding protein HisP
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 123174: Histidine transport ATP-binding protein hisP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3831 PGA1_262p02350 histidine transport ATP-binding protein HisP
MPDPAAADPAPLSTASAPLQARAETPVEPHTQAEAIRVCDLHKSFGSLEVLKGVSLTAKQ
GDVVAIIGGSGSGKSTMLRCINFLETPNSGEIVIAGETVAMRQDGSPADRRQIERIRTRL
AMVFQQFNLWTHRTLLENVIEVPVHVLKVPRSEAIHRAHELLARVGLGDKADAFPAFLSG
GQQQRAAIARALAVDPNVMLFDEPTSALDPELVGEVLTVIRDLAAEGRTMLLVTHEMKFA
REVANHVVYLFEGRIEEQGPPSEVFGNPKSERLKQFLSSVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory