PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3854 PGA1_78p00180 putative sn-glycerol-3-phosphate transport system permease protein UgpE (309 amino acids)

SeqID: GFF3854 PGA1_78p00180 putative sn-glycerol-3-phosphate transport system permease protein UgpE
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 136751: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3854 PGA1_78p00180 putative sn-glycerol-3-phosphate transport system permease protein UgpE
MVDLTPQTPKGSPVRILDGPRGAKPKTRVSRRNVMLYGTLLLIALYYLLPLYVMVVTSLK
GMPEIRLGNIFSPPVEITFQPWIKAWSEACTGINCDGLSRGFGNSIKILVPSVALSIAIA
SVNGYALANWRFKGSETFFTILIIGAFIPYQTMLYPIVIILRELKLMGSLWGLVLVHSIF
GMPILTLLFRNYFSSLPEELFKAARVDGAGFWGIYLRVMVPMSIPIFVVAMILQVTGIWN
DFLFGVIYTKPETYPMTVQLNNIVNSVQGVKEYNVNMAATLLTGLVPLVIYLVSGKLFVR
GIAAGAVKG