PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3858 FitnessBrowser__psRCH2:GFF3858 (468 amino acids)

SeqID: GFF3858 FitnessBrowser__psRCH2:GFF3858
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121356: Glutamine synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3858 FitnessBrowser__psRCH2:GFF3858
MSKSLQLIKDYDVKWIDLRFTDTKGKQHHVTVPARDAQDEDFFEHGKMFDGSSIHGWKGI
EASDMILMPVDETAVLDPFTEEPTLILVCDIVEPSTMQGYDRDPRSIAKRAEEFLKTTGI
GDTVFVGPEPEFFIFDQVKFKSDISGSMFKIYSEQGSWMTDQDVEGGNKGHRPAVKGGYF
PVPPCDHDHEIRTAMCNAMEDMGLVVEVHHHEVATAGQNEIGVKFNTLVAKADEVQTLKY
CVHNVADAYGKTATFMPKPLYGDNGSGMHVHMSISKDGKNTFAGEGYAGLSETALYFIGG
IIKHGKALNGFTNPATNSYKRLVPGFEAPVMLAYSARNRSASIRIPYVSSPKARRIEARF
PDPAANPYLCFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEGKLIPQVCGSLKEALEE
LDKGRAFLTKGGVFSDEFIDAYIELKSEEEIKVRTFVHPLEYDLYYSV