PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3867 FitnessBrowser__Phaeo:GFF3867 (951 amino acids)

SeqID: GFF3867 FitnessBrowser__Phaeo:GFF3867
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597641: glycine cleavage system protein P2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3867 FitnessBrowser__Phaeo:GFF3867
MAFKLTDYEAYDFANRRHIGPSPREMADMLKVIGFNTLDELIDATVPPAIRQTEALDWGP
AMTERDALFHMKEIAGKNKVLTSLIGQGYHGTTTPAPILRNILENPAWYTAYTPYQPEIS
QGRLEALLNFQTMVSDLTGLPVANASLLDEATAAAEAMAMAHRGSRSKANNAAFFVDKNC
HPQTVAVIKTRAEPLGIDVVVAEPTELDAGAVFGAIFQYPGTHGHVTDFSDQIAALHEHK
GIAVVAADILSLALLKSPGEMGADIAIGSTQRFGVPMGYGGPHAAYMATSDKLKRSMPGR
IIGVSIDARGNKAYRLSLQTREQHIRREKANSNVCTAQALLAVIASMYAVYHGPDGIKAI
AQSVHRKTARLAAGLEEAGFKVEPEVFFDTITVEVGHLQKTVMEAAVQRGINLRRVGETK
VGISLDEQTRPETIEAVWGAFGIDRKDDSSNKQYRLPEAMLRDSAYLTHPIFHKNRAEAE
ITRYMRRLADRDLALDRAMIPLGSCTMKLNATIEMIPVTWPEFSNLHPFVPEDQAQGYHQ
MIDDLNDKLCQITGYDAISQQPNSGAQGEYAGLLTIRNYHASRGQAHRNVCLIPTSAHGT
NPASAQMVGWKVVPIKADDNGNIDVADFREKAEKHSDHLAGCMITYPSTHGVFETTVQEV
CQITHDHGGQVYIDGANMNAMVGVSRPGDIGGDVSHLNLHKTFCIPHGGGGPGMGPIGVK
AHLTEHLPGHPEYGTAVGPVSAAPFGSPSILPVSWAYILLMGGSGLTQATKVAILNANYI
AARLQDAYPILYTSESGRVAHECILDTRPLNDEAGVSVDDVAKRLIDSGFHAPTMSWPVA
GTLMVEPTESEPKDELDRFCEAMLSIRSEAQDIIDGKIDAENNPLKHAPHTVRDLVGEWD
RPYSREQACFPPGNLGVDKYWPAVNRVDNAYGDRNLICTCPPMEDYAEAAE