PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3902 FitnessBrowser__Marino:GFF3902 (371 amino acids)

SeqID: GFF3902 FitnessBrowser__Marino:GFF3902
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Extracellular          0.00
    Periplasmic            0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3902 FitnessBrowser__Marino:GFF3902
MSIYQESPTYSDQLENGLSGPSLMLDRVHCQFHGDSVVKDINLHLEAGEVVCLLGPSGCG
KTTLLRIAAGLQMPTRGKVFLGSSLVSAPGGVQVPPEKRNVGLAFQESALFPHLTVLENV
CFGISSMPKKQQRTRALELLGRLGMADAANVYPHTLSGGQQQRVALARALAPSPRVMLLD
EPFSSLDARLRDQIRDDTLHVLKELNTATLLVTHDPEEAMFMADRIALMRDGEIVQTGTP
TDLYCNPAEPFVVNFFGQVNEHRGVVHNGVVTTPLGHLEAKGFEDGSSVRILIRPEAVKV
RQLEGQAGDDRTSHVLMSRLLGPTSLLHICAHGPDGQEMHLHAKVPGVFLPEQGQAVSLE
LDMSQVFLFGE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory