PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF3986 FitnessBrowser__Marino:GFF3986 (554 amino acids)

SeqID: GFF3986 FitnessBrowser__Marino:GFF3986
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF3986 FitnessBrowser__Marino:GFF3986
MFDRHYKVWPKELPKTMTLPKTSVYTNLEISARRYPDHTAIIFYDAPITYRRLNEEVETL
AGYLQEQGVKKGDRVLLYMQNSPQYVISYYAILRADAVVIPVNPMNRSAELEHFIADTGA
TVCLAGQELAGFIAPMIGDSNLDQVVVASYSTYIDPETDLDLPAEVAAPVWSRDLPGVVT
WEVAMAAGYAPGPHTATPDDLAVIPYSSGTTGAPKGCMHTHRSVMATAIHRIFWNLTTPD
SVQLATLPFFHVTGMTGSMNGPIAAGAASVIMTRWDRTTASRLIERYKVTGWTNIVTMAV
DFLSNPDIGQYDLSSLNMIGGGGATMPSAVAEKLKRMTGLDYIEGYGLSETMAATHINPN
AHPKSQCLGIPVFDVDSRIIDVDTLEEKGPGETGEIVSCGPQVTRGYWNRPSETEAAFVE
IDGKQFFRTGDLGYYDEDGYFFMVDRVKRMINASGYKVWPSEVEGMMYRHPAIHEVCIIS
APDPKRGETVKACIVLTPEAEGQTSAGDIIAWCKEQMATYKVPTMIDFVDQLPKSPTGKL
MWRALQEEEWKEKS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory