PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4004 FitnessBrowser__psRCH2:GFF4004 (473 amino acids)

SeqID: GFF4004 FitnessBrowser__psRCH2:GFF4004
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2500890: Amino acid carrier protein alsT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4004 FitnessBrowser__psRCH2:GFF4004
MLDLLNDLIWSKLLIVMLIGLGLLFTIRSGFVQFRYFGNMFTIFGHAFERQPGQLSSFQA
LMLSVAGRVGAGNIAGVSVAIMLGGPGAIFWMWVVALVGMATSYFECSLAQLYKRREPDG
TYRGGPAFYIQHGLGQRWLGIVVSILLLMTFGFGFNAVQSFTVASSLHDTFGVPTVASGI
ALTLVIAGIIFGGIRRIAKWADVLVPVMAFSYLAMALFVIGSNFSAIPETFGLIFRSAFG
LEQAFAGGIGAAILMGVKRGLFSNEAGLGSAPNVAAVAEVKHPVAQGIVQSLSVFIDTII
LCSCTALIILLSGVYEPGMDQAGVVLTQTAVAAVVGEWGRVFVSVALLLFVFTTLIYNYY
LGENALGFFTEKRMPVVIYRILVVILVLWGSVQDLGTVFAFADVTMGLLAIANLIAVALL
FKVGLRLMRDYDRQIRAGIEQPVLDPKDFADLDLDPAVWKANMPAAPDATERR