PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4068 Psest_4141 3-carboxymuconate cyclase (397 amino acids)

SeqID: GFF4068 Psest_4141 3-carboxymuconate cyclase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4068 Psest_4141 3-carboxymuconate cyclase
MTTLTRGNWPTLLRLVFALLVGALLAGGARAETDDMHILIGSYTHDSDSPGILRLRFDPA
TGQIDPKPVQTLTSDNPSWLVLDDKRGRLYATNENGPAHADPVGRVSAWQLDSSSEHQLI
GQNISLGDEPTHASLSHDGRYLFISNYGSRPNPGGSLAVMPLAEDGHPLPVTQILAHQSS
GVHPERQRSAHVHSAVPSPDGKRLLVSDLGADRVFVYRYDPQNAERPLQADEPASIELPP
GSGPRHLVFHPNGKHAYLALELSAQVASFDYTNGTLTRRQLLDLKDAGNDVRHSPGAIHS
SADGRFLYVSDRGDYNHIIVFAIEADGTLREIQRRSSEGREPREFAITADGRFMLIANQL
SDELVVIRRDPDSGQLGEKLQTLTVGRPSDIKLLAPN