PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF409 FitnessBrowser__WCS417:GFF409 (513 amino acids)

SeqID: GFF409 FitnessBrowser__WCS417:GFF409
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF409 FitnessBrowser__WCS417:GFF409
MTTHLEPVTFGERALRIEDVLALANRQAPTQLQSDAAYRQRIAKGAQFLDSLLDKEGVIY
GVTTGYGDSCVVAVPLQHVEALPRHLYTFHGCGLGKLLDAQATRAVLAARLQSLCHGVSG
VRVELLERLHAFLEHDVLPLIPEEGSVGASGDLTPLSYVAATLSGEREVMFRGERRQAID
VHRELGWEPLVLRPKEALALMNGTAVMTGLACLAFARADYLLQLATRITALNVVALQGNP
EHFDERLFAAKPHPGQMQVAAWLRKDLAIDAPTAPLHRLQDRYSLRCAPHVLGVLADSLN
WLRSFIEIELNSANDNPIIDAEEERVLHGGHFYGGHIAFAMDSLKTLVANVADLLDRQLA
LLVDVRYNHGLPSNLSGAPADRAMINHGFKAVQIGTSAWTAEALKNTMPASVFSRSTECH
NQDKVSMGTIAARDAIRVLELTEQVAAATLLAANQGVWLRAQAEDARPLPPALAAMHEAL
AKDFPPVIEDRALEGELRLCLQRIAEQHWRLHA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory