PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4091 FitnessBrowser__Marino:GFF4091 (307 amino acids)

SeqID: GFF4091 FitnessBrowser__Marino:GFF4091
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4091 FitnessBrowser__Marino:GFF4091
MKKGVMRPGHVQIRVLDMDEALKHYTDLLGLIETDRDDHGRVYLKAWTEVDKFSVVLRPA
DEPGMDFMAFKVVDEASLQQLEKDLADHGVEVEQVPEGELKDCGRRVRFNAPSGHTFELY
ADKKYTGKWGITEVNPEAWPRGLDGMKAVRFDHCLLYGPELAATYDLFVNVLGFYLAEQV
LDGDGTRIAQFLTLSTKAHDIAFIHHEEKGKFHHASFYLETWEDVLRAADLISMTDTSID
IGPTRHGLTHGKTIYFFDPSGNRNEVFCGGDYNYPDHKPVTWQAEQLGKAIFYHDRVLNE
RFLTVLT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory