PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4128 FitnessBrowser__Marino:GFF4128 (274 amino acids)

SeqID: GFF4128 FitnessBrowser__Marino:GFF4128
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130689: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4128 FitnessBrowser__Marino:GFF4128
MLTPFLLWIVLLVLLPHLQMLRVSFLVRESWDTLAWGLEQYQNFFTESYYWRTFVRTGVM
SLFTTFLTLIIAFPIAWYIARLARGRSKGFLFLACLIPFWASELVRTYGWMILLRESGLF
SSWLQALGWADGPVEMLYNDVAVIIGLVYNGLLFMVVPLVTTLDGMDENLVEAGYDLGGG
HGTVLREIVVPWAMPGIVSGCIVVFMLTLGSYLTPVLMGGKDSAWFTEQIFTQFITRFNW
EQGAALGVLLLVLSSVIVWLGLKISGQSLRKVMG