PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4234 FitnessBrowser__WCS417:GFF4234 (448 amino acids)

SeqID: GFF4234 FitnessBrowser__WCS417:GFF4234
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596096: succinylarginine dihydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4234 FitnessBrowser__WCS417:GFF4234
MKSYEVNFDGLVGPTHNYGGLSFGNVASQSNSQQHSNPKEAALQGLQKMKALMDMGFVQG
VLAPQERPDVAALRNLGFSGSDAQVIQQAAKDAMPLLVASCSASSMWVANAATVSPSADT
FDGRVHFTAANLNCKYHRSIEHPTTSRVLGAMFADDKHFAHHAALPAVAQFGDEGAANHT
RFCREYGEAGVEFFVFGRSAFDPRYPAPQKYPARQTLEASQAVARLHGLKDDGVVYAQQN
PAVIDAGVFHNDVIAVGNGEVLFYHEDAFLNTEQMLAELQGKLGKLGGNFQSVCVPRAQV
SVEDAVRSYLFNSQLLSRADGSMLLIVPEECRANERVWQYLQSLTATGGLIREVKVFDLK
QSMQNGGGPACLRLRVALNETELAAVNPGVIMTAPLYDTLTQWVDKHYRDSLRETDLADP
QLLLECRTALDELTQILKLGSVYPFQIN