PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4616 FitnessBrowser__WCS417:GFF4616 (297 amino acids)

SeqID: GFF4616 FitnessBrowser__WCS417:GFF4616
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4616 FitnessBrowser__WCS417:GFF4616
MKVFVTGAAGFIGGSIATGLVKAGHSVTGLVRSVEQAAEMTALGITPVIGSLDDTAVLTE
QAQKADAVINAASSDHRAAVETLLVALKGSNKPFLHTSGSSIVGDASGGKSSEVIYFEDN
LPEPTVDKAARVAIDNLILAAAKEGVNSAVICNTLIYGHSLGVKRDSVQLPRLLKQARKS
GVVRHVGSGQNIWSNVHIEDVVALYLLALTKNVPGTFYFVESSEAAFIDMTTAIAEALNL
GKPQDWPLADAEAEWGYEMANYGLGSNSRVRGKHARERLGWAPKRTSVVEWIRNEMV