PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4630 FitnessBrowser__WCS417:GFF4630 (163 amino acids)

SeqID: GFF4630 FitnessBrowser__WCS417:GFF4630
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597709: anthranilate dioxygenase small subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4630 FitnessBrowser__WCS417:GFF4630
MNAQLQYQIEQFFYRKSELCDAQDWDAYVQLFDPQSEFHLPQWDSEHVYTRDPKREMSLI
YYANRSGLEDRVFRLRTGKAASATPMPRTLHLINNVRIAEQADGTLEVRLNWHTLFYRLA
TSEQFYGHATYRLKPDGDSWLITRKHALLLNDTINSVLDFYHL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory