PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4667 FitnessBrowser__WCS417:GFF4667 (295 amino acids)

SeqID: GFF4667 FitnessBrowser__WCS417:GFF4667
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12643446: Glutamyl-tRNA synthetase 1]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4667 FitnessBrowser__WCS417:GFF4667
MTASTYIGRFAPTPSGHLHFGSLVAALASYLDARANQGRWLMRMEDLDPPREEPGAQAAI
LHALESYGFEWDGELVRQSERHDAYANVLNGLFNHGLAYACTCSRKQLEPYNGIYPGLCR
NVGHAQQDAAIRLRVPELEYHFTDRVQGEFRQHLGRDVGDFVIRRRDGLYAYQLAVVLDD
AWQGVTDIVRGADLLDSTPRQLYLQELLGLRQPRYLHVPLIIQPDGNKLGKSYRSPPLTP
DQATPLLLRALRALGQQPGAELLHASPRELLDWGIAHWDASRIPRTLTLAEAQLS