PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF469 FitnessBrowser__Marino:GFF469 (759 amino acids)

SeqID: GFF469 FitnessBrowser__Marino:GFF469
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF469 FitnessBrowser__Marino:GFF469
MVTTHNLGFPRIGARRELKFAQEAFWKGRISEEDLQISGADLRRRHWQNQRPLDRVPVGD
FSFYDQILDMSVTLGNLPERVNDTKGSELDRYFRVARGRSGQESACCGVQAGEMTKWFDT
NYHYIVPEFHQNTRFRLNGNRLIDQIDEARAQGVTPKPVIIGPVTYLWLGKAKDDSDRLL
LLESLLPVYSELLELLADRGVEWVQVDEPALVTDLDADWRHAFSLAYHHLKTSTPKLLVT
TYFGELRENLQLACELPVAGLHLDAISAPQEVPRVVDWLPPHKQLSLGVINGRNIWRSDL
EKTLDWLEPVYEKLGNRLWLAPSCSLIHVPVDLTSEDKLDPEIRSWLAFAVQKLDELKTL
ATALNNGRAAVRKQLAESTVAVNSRAKSERVHSASVQARLADVSPALGQRQSRFPDRIAI
QQRKLGLPRFPTTTIGSFPQTRDIRQTRLQFRKGELTEPQYNARIREEVRRCIVEQEALG
LDVLVHGEAERNDMVEYFGEQLDGYTFSQFGWVQSYGSRCVKPPILFGDISRPKAMTVEW
IRYAQSLTKKPLKGMLTGPVTILNWSFVRDDQPRRETCLQLALAIREEVLDLEASGARII
QIDEAALREGLPLRQADWKNYLDWAIESFRISANGVRDETQIHTHMCYSEFNDIIEAIAR
MDADVITIETSRSDMELLDAFRGFHYPNDIGPGVYDIHSPNIPDSEQIRSLMIKAAERIP
AERLWVNPDCGLKTRQWEEVRPALKSMVAAARELRETIQ