PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF4893 FitnessBrowser__WCS417:GFF4893 (188 amino acids)

SeqID: GFF4893 FitnessBrowser__WCS417:GFF4893
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598352: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF4893 FitnessBrowser__WCS417:GFF4893
MWIRLAFFSVLSKLLYGMNVRVIKGFARVINKGHLQFGSRFTAGVDLRIEVLEDSACVTF
GQNVKINDYCHIGAMSRVVVGDDCLIGSRVTIVDHEHGVYRKPSDHPASLPWTPPDERLL
QGKPIIIEKNVWIGSGAIIVGGVTIGEGSVIGANAVVTRDISRYSLAVGAPAKVIKTFDE
GGKQWLCV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory