PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5058 FitnessBrowser__WCS417:GFF5058 (560 amino acids)

SeqID: GFF5058 FitnessBrowser__WCS417:GFF5058
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5058 FitnessBrowser__WCS417:GFF5058
MSKTNRHPADGKKPITIFGPDFPFAFDDWIEHPAGLGSIPTANHGAEVAIVGAGIAGLVA
AYELMKLGLKPVVYEASKMGGRLRSQAFEGAEGIIAELGGMRFPVSSTAFYHYVDKLGLE
TKPFPNPLTPASGSTVIDLEGQTHYAQKLSDLPVLFQEVADAWADALEAGSQFGDIQQAI
RDRDVPRLKELWNKLVPLWDDRTFYDFVATSKAFAKLSFHHREVFGQVGFGTGGWDSDFP
NSMLEIFRVVMTNCDDHQHLVVGGVAQVPMGIWRHVPERCAHWPAGTSLSSLHRGAPRAG
VKRIAHAADGRFAVTDNYGDTREYAAVLTTCQSWLLTTQIECDETLFSQKMWMALDRTRY
MQSSKTFVMVDRPFWKDKDPETGRDLMSMTLTDRLTRGTYLFDNGDDKPGVICLSYSWMS
DALKMLPQPIDKRVKLALDALKKIYPKVDIKARIIGDPITVSWEADPHFLGAFKGALPGH
YRYNQRMYAHFMQKDMPAEQRGIFIAGDDVSWTPAWVEGAVQTSLNAVWGIMTHFGGSTH
PENPGPGDVFDEIGPIALAD