PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF510 FitnessBrowser__Phaeo:GFF510 (372 amino acids)

SeqID: GFF510 FitnessBrowser__Phaeo:GFF510
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 266444: Lactose transport ATP-binding protein lacK]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF510 FitnessBrowser__Phaeo:GFF510
MPRATGRPPESQSKMALELINVTKRVGAQLHIKETSLVLEPGHFNVLLGATGSGKTSLIK
MMAGLDPIASGQVVMDGQDVTALSTQKRNISLVHQFFINYPHMTVYENIASPLKVAGMAK
SEIEGRVEEAADILQLRPMLHRRPHELSGGQQQRTALARAIAKESRAVFLDEPLANLDYK
LREELRDQLPELFAGRGAVVVYATSEPEEALLLGGKTALMQDGRVTQFGTTADIYRNPDN
VAAARVFSDPPINTAPIVKQGSTARLGPDVSWSLTGAAADLADGPYTIAIRPYHVLPVAT
PLTTVQLSGQVQVTELSGSESSAHFDMGLDMDHGSWVSLSAGVHPYEVGEQHDFYMDPSA
AYVFAPDGSRVA