PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5140 FitnessBrowser__WCS417:GFF5140 (663 amino acids)

SeqID: GFF5140 FitnessBrowser__WCS417:GFF5140
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114921: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5140 FitnessBrowser__WCS417:GFF5140
MSSASLIKTPPEKVRVNGWVFYTSTALILLLTAILIIAPQEAGRMLGVAQAWLSKSFGWY
YMVVIAAYLVFVVGLAFSSYGKLKLGSKDDTPDFSYGAWAGMLFSSGIGISLLYFGASEP
LDHYFNPPEGAAASNGAARQALQLTFLHWGLHGWAIYALVGLAVAYFAYRHNQPLALRSA
LYPLVGERWVKGAAGHAVDGFGMFVTLLGLVTNLGIGSMQVSSGLENLFGMEHSNTNLLI
VIIVMSTVATIAAVSGVENGIRRLSNLNIVLFSGLLIFVLLFGPTLHLLNGLVQNTGDYL
NGIILKTFDLYVYEGDADKTERWMGLWTLFYWAWWISWAPFVGMFIARISRGRTVRELVA
GVLLIPLGFTLAWLSIFGNSALDLVLNQGAVALGKTALEQPSMAIYQLLEHYPASKIVIG
VSIFVGFVLFLTPADSGAVMMANLSCKGGNVDEDAPHWLRIFWSAVITLVTIGLLFAGNF
EAMQTMVVLAGLPFSVVLIFFMFGLHKAMRQDVAIEQEQAQLAERGRRGFSERLTALDLQ
PSQGTVQRFMDKHVTPALEEAATALREQGLEVQTLLGKSKRCIGVRIEMAEGNPFVYEVS
LDAYSSAPSDLPEEERTRYYRAEVYLHNGPQEYDLMGFTQEQITRDVLDQFESHRQLLGR
VYS