PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5300 FitnessBrowser__WCS417:GFF5300 (452 amino acids)

SeqID: GFF5300 FitnessBrowser__WCS417:GFF5300
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5300 FitnessBrowser__WCS417:GFF5300
MSNNLDQLTDWLKDHKITEVECMIGDLTGITRGKISPTNKFIAEKGMRLPESVLLQTVTG
DYVEDDIYYELLDPADIDMICRPDQNAVFLVPWAIEPTAQVIHDTYDKQGNPIELSPRNV
LKKVLKLYADKGWQPIVAPEMEFYLTKRCEDPDFPLQPPIGRSGRPETGRQSFSIEAANE
FDPLFEDVYDWCELQELDLDTLIHEDGTAQMEINFRHGDALSLADQILVFKRTMREAALK
HDVAATFMAKPMTGEPGSAMHLHQSIIDIATGKNVFSNEDGTMSQLFLNHIGGLQKFIPE
LLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDAGPQNRRVENRLPGADANPY
LAIAASLLCGYIGMVEGHNPSAPVVGRGYERRNLRLPLTIEDALERMENSKTIEKYLGQK
FITGYVAVKRAEHENFKRVISSWEREFLLFAV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory