PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF5534 FitnessBrowser__WCS417:GFF5534 (137 amino acids)

SeqID: GFF5534 FitnessBrowser__WCS417:GFF5534
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141330: Histidine biosynthesis bifunctional protein hisIE]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF5534 FitnessBrowser__WCS417:GFF5534
MTLSMLDLEGAAVGSRFPLEPVLDALPWNRDGLIAAIAQQHGSGEVLMLAWMNRQALKET
LDTGQVCYWSRSRQQLWRKGESSGHWQQLVEARLDCDGDAVLLIVDQQGTACHTGRPTCF
YNAIDGDYVHIITEPLA