PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF583 PS417_02965 acetyl-CoA carboxylase (453 amino acids)

SeqID: GFF583 PS417_02965 acetyl-CoA carboxylase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF583 PS417_02965 acetyl-CoA carboxylase
MLKPAKKLQKVLIANRGEIALRILRACKEEGIKTVAVYSTADTELMHVKLADESICIGPP
LATNSYLKVSNIIAAAEVTGADGIHPGYGFLAENADFAEQVEKSGFAFIGPKAETIRLMG
DKVSAKDAMIAAGVPTVPGSDGPLPEDEETALRIGREVGYPVIIKAAGGGGGRGMRVVHK
EEDLIEAAKQTRSEAGAWFGNPMVYLEKYLTNPRHVEVQVLSDGQGHAIHLGDRDCSLQR
RHQKVLEEAPAPGLDEKARQEVLARCVKACIDINYRGAGTFEFLYENGRFYFIEMNTRVQ
VEHPVSEMVTGIDIVKEMLSIAAGNPLSFTQDDVKMHGHSLECRINAEDPKTFIPSPGLV
KHFHAPGGNGVRVDSHLYSGYKVPSNYDSLIGKLITWGATRDEAMARMRNALDEIVVDGI
KTNIPLHRDLVRDEGFCEGGVNIHYLEHKLANQ