PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF62 FitnessBrowser__psRCH2:GFF62 (269 amino acids)

SeqID: GFF62 FitnessBrowser__psRCH2:GFF62
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595233: tryptophan synthase alpha chain[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF62 FitnessBrowser__psRCH2:GFF62
MSRLQSRFAELKEQNRAALVTFVTAGDPDYATSLAILKGLPDAGADVIELGMPFTDPMAD
GPAIQLANIRALAAKQNLPKTLQMVREFRESNASTPLVLMGYYNPIFAYGVERFVADAKE
AGVDGLIVVDLPPEHNDELCDPAQAVGIDFIRLTTPTTDDKRLPTVLNGSSGFVYYVSVA
GVTGAGSATMEHVEEAVARLKRHTDIPVCVGFGIRTPEQAAAIARLTDGVVVGSALIDQI
ASAKSPQDAVEGVLGLCREISAGVRGARG