PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF789 FitnessBrowser__WCS417:GFF789 (385 amino acids)

SeqID: GFF789 FitnessBrowser__WCS417:GFF789
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141694: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF789 FitnessBrowser__WCS417:GFF789
MIELQNLSKTFQSNGKTVTAVNDVSLTVNEGEICVFLGPSGCGKSTTLKMINRLIKPTSG
KILINGEDTTDLDEVTLRRNIGYVIQQIGLFPNMTIEENIVVVPKLLGWDKQKCHDRARE
LMSMIKLEPKQYLHRYPRELSGGQQQRIGVIRALAADAPLLLMDEPFGAVDPINREMIQN
EFFEMQRALNKTVIMVSHDIDEAIKLGDKIAIFRAGKLLQIDHPDTLLAHPADEFVSNFV
GQDSTLKRLLLVKAEDAADNAPSVSPETPVADALELMDEHDRRYMVVTCAENKALGYVRR
RDLHRQTGTCGQYLREFNATAAYDEHLRILLSRMYEFNRSWLPVMDAERVFLGEVTQESI
AEYLSSGKSRGGKTSIVSPAETALA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory