PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF834 FitnessBrowser__Marino:GFF834 (389 amino acids)

SeqID: GFF834 FitnessBrowser__Marino:GFF834
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF834 FitnessBrowser__Marino:GFF834
MDGLYKTKNHIDDVRESTAINAVSGNSGASQVDPTEPADQTVITPRGNDQFNEVIHQKGG
GSMTQHSKPVVTVLTAPGEQEPPGMDAVRARADVRFACDEPTLRDTLPGTDIMMVTDFRT
EALAAAWHTADKLQWIHATSAGVDALMFPDLIRGDVTVTNARGIFDRTIAEYVLCTILMF
AKDFPNSIRLQMKHQWKHRDTERAEGKQVLVVGAGSIGRQIGRLVGAAGLKAHGIARKPR
KEDPDFVAVHGNDDLYEQLGHADFVVIAAPLTPQTEGLFDEKAFKAMKNSARLINIGRGP
IVKTDDLITALENGEIAGAGLDVFEEEPLAEDHPLWDMENVTMTAHMAGDFIGWKRALTD
QFLENFDRWHKGDELFNLVDKELGYAGSK