PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF894 FitnessBrowser__WCS417:GFF894 (560 amino acids)

SeqID: GFF894 FitnessBrowser__WCS417:GFF894
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF894 FitnessBrowser__WCS417:GFF894
MLQTRVIPPAEGAYQYPLLIKRLLMSGARYEKTREIVYRDKLRYTYPTLIERVARLANVL
TEAGVKAGDTVAVMDWDSHRYLECMFAIPMIGAVIHTINVRLSPEQILYTMNHAEDRFVL
VNSEFVGLYQAIAGHLTTVDKTLLLTDGDSKTAELPNLVGEYESLLAAASPKYDFQDFDE
NSVATTFYTTGTTGNPKGVYFTHRQLVLHTIGVATIMGSVDSVRLLGTNDVYMPITPMFH
VHAWGLPYVATMLGLKQVYPGRYDPEYLVELWRKEKVTFSHCVPTILQMVLNAKAAQGVD
FGGWKIVIGGSALNRTLYEAAKARGIQLTAAYGMSETGPLVSCAHLNEELMAGTEDERIT
YRIKAGVPGPLVEAAIMDAEGNFLPADGESQGELVLRAPWLTEGYYNEPQKGAELWAGGW
MHTGDVATLDAFGVIDIRDRIKDVIKTGGEWISSLALEDLVSRHPAVREVAVVGIADPQW
GERPFALLVVRDGHVIGARELKEHLKPFVELGHLSKWAIPSQIAVVTEIPKTSVGKLDKK
RIRIDIIEWQANNSTFLSTL