PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF92 Psest_0092 phosphonate C-P lyase system protein PhnK (270 amino acids)

SeqID: GFF92 Psest_0092 phosphonate C-P lyase system protein PhnK
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF92 Psest_0092 phosphonate C-P lyase system protein PhnK
MSAAEQLLPAASVSTEPLFAVRDLTRLYGPDKGCQGVSFDLYPGEVLGIVGESGSGKSTL
LSLLCGRCPPDRGSVQYRDAAGDWLDLYAASEAERRTLLRTEWGFVEQNPRDGLRMGVSA
GANIGERLMAQGVRHYGQLRAAGLDWLQQVEIDPARIDDLPRTFSGGMQQRLQIARNLVS
SPKLVFMDEPTGGLDVSVQARLLDLLRGLVRELDLAVVIVTHDLAVARLLADRLMVMRRS
RVVEAGLTDQILDDPQHPYTQLLVSSVLQP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory