PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF93 FitnessBrowser__WCS417:GFF93 (443 amino acids)

SeqID: GFF93 FitnessBrowser__WCS417:GFF93
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00713: NA_DICARBOXYL_SYMP_1 Pattern - Cytoplasmic Membrane]
    Motif-            CytoplasmicMembrane           [matched PS00714: NA_DICARBOXYL_SYMP_2 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121462: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF93 FitnessBrowser__WCS417:GFF93
MKKAKLSLAWQILIGLVLGIAIGAVLNHFSAEKAWWISNVLQPAGDIFIRLIKMIVIPIV
ISSLIVGIAGVGDAKKLGRIGVKTILYFEIVTTIAIVVGLLLANLFHPGAGIDMSTLGTV
DISKYTATAAEVQHEHAFIETILNLIPSNIFAAVARGEMLPIIFFSVLFGLGLSSLKPEL
REPLVTMFQGVSESMFKVTHMIMKYAPIGVFALIAVTVANFGFASLLPLAKLVILVYVAI
LFFAFVILGLIARLFGFSVVKLMRIFKDELVLAYSTASSETVLPRVIEKMEAYGAPKAIC
SFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSVGQQLMLVLTLMVTSKGIAGVPGVS
FVVLLATLGSVGIPLEGLAFIAGVDRIMDMARTALNVIGNALAVLVISRWEGMYDDAKGE
RYWNSLPHWRSKDAAPVAQATRS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory