PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF944 FitnessBrowser__WCS417:GFF944 (483 amino acids)

SeqID: GFF944 FitnessBrowser__WCS417:GFF944
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF944 FitnessBrowser__WCS417:GFF944
MIPVILSGGSGSRLWPLSRKQFPKQFLALTGEHTLFQQTLERLVFEGMDSPIVVCNKDHR
FIVNEQLAARKLESQRILMEPFGRNTAPAVALTAMMLVNEGRDELMLVLPADHVIDDQKA
LQRALALATVAAERGEMVLFGVPATRPETGYGYIKSTNDSLLPEGVSRVEQFVEKPNEKR
AMEFVKSGGYFWNSGMFLFRASRFLEELKKHDPDIYDTCLLTLERSEQTADTVSFDEATF
ACCPDNSIDYAVMEKTQRACVVPLSAGWSDVGCWASLWAVNDKDVHGNVSKGDVVIQDSR
NCMIHGNGKLVSVIGLDNIVVVETKDAMMIAHKDKVQGVKQMVSTLNDQGRSETQNHCEV
YRPWGSYDSVDMGGRFQVKHISVKPGACLSLQMHHHRAEHWIVVSGTAEVTCDENVFLLT
ENQSTYIPIASVHRLRNPGKIPLEIIEVQSGSYLGEDDIERFEDIYGRSTPVERGVSVKT
IAQ