PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0007 FitnessBrowser__Korea:Ga0059261_0007 (1110 amino acids)

SeqID: Ga0059261_0007 FitnessBrowser__Korea:Ga0059261_0007
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0007 FitnessBrowser__Korea:Ga0059261_0007
MPKRTDISSILVIGAGPIVIGQACEFDYSGTQAIKALKEEGYRIVLVNSNPATIMTDPEL
ADATYVEPITPAVVAKIIEKERPDAVLPTMGGQTALNTALALANDGTLEKFGCIMIGADA
EAIDKAEDRLKFKDAMTKIGLESARSAIAHSEADALAALEKVGLPAIIRPSFTMGGSGGG
IAYNREEFLTIVRSGLDLSPTTEVLIEESLLGWKEYEMEVVRDRNDNAIIICSIENIDAM
GTHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSNVQFAVNPKDGRLIVIEM
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEIENDITGATPASFEPTIDYVVTKIPR
FAFEKFKGAEATLGTAMKSVGEVMAIGRNIHESMQKALRGLETGLSGFNNVDHLAGAPRD
EIEAALAIRSPDRLLIAAQALREGFTVAEVHALTKYDPWFLERMAEIVRAETEVATNGLP
QDAAGMRKLKSMGFSDKRLAWLALQSANLREGAGAMARSSGLIGEVVKAMTGGVTEADVR
AHRHKLGVRPVFKRIDTCAAEFDAKTPYMYSTYEAPSFGEPECESQVSDRRKIVILGGGP
NRIGQGIEFDYCCCHACFALSDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLEI
LHVEQSKGELLGVIVQFGGQTPLNLARALEAAGIPILGTSPDAIDLAEDRERFADLVSKL
GLKQPANGIARSREEAIAVAERIGYPVLTRPSYVLGGRAMEIVDTVEQLDHYIQTAVQVS
GDAPVLIDQYLRDAVEVDVDAIADGDDVVVAGVLQHIEEAGVHSGDSACSIPPYSLSAQI
IAEIERQTEALARGLNVKGLMNIQFAVKDGEVYLIEVNPRASRTVPFVAKAIGAPIAKIA
SRVMAGEKLKDLPKIDRDIDYVAVKEAVFPFNKFPGVDPVLSPEMKSTGEVMGIDSDFPI
AFAKSQLGAGMTLPTEGRVFVSVKDGDKPVVLPGVRILVEQGFSIVATGGTADYLEANGV
PVERVNKVAQGRPHIVDRIVDGDIALIFNTTEGWQSLKDSESIRASALSLKIPYFTTAPA
SVAAARAIAALAVQSLEVRPLQSYYSQSHN