PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0484 Ga0059261_0484 ABC-type multidrug transport system, ATPase component (245 amino acids)

SeqID: Ga0059261_0484 Ga0059261_0484 ABC-type multidrug transport system, ATPase component
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 119898: Iron(III) dicitrate transport ATP-binding protein fecE]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0484 Ga0059261_0484 ABC-type multidrug transport system, ATPase component
MPQDQASVLLQDVSLAYGAQEVLRGLTLSVPAGSITALLGGNGAGKSTTLAALLGFVRAQ
SGTILVCGVDPGSDPDGARRRIAYLPENVALYEHLSATENAEYLLALSGEQHARRDITEA
FAAAGLQEEAWDQRLGGFSKGMRQKVAIAVALLRRVPVLLLDEPTSGLDPRATADFNALV
AQVRDRGTAVLMVTHDLLSAADVADRIAFLENGRVTDEVAASGPERFDVRALHARFQVGG
EPLAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory