PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0628 FitnessBrowser__Korea:Ga0059261_0628 (319 amino acids)

SeqID: Ga0059261_0628 FitnessBrowser__Korea:Ga0059261_0628
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596473: cobalamin biosynthetic protein CobC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0628 FitnessBrowser__Korea:Ga0059261_0628
VTPWTHHGGQLAKARTTFGDGDAPWIDLSTGINPRQWPGVARLAIDWSRLPDASALTGLE
TTAARYFGADPACVLAVPGTEIGLRLLGGHLPRPVRYGWPSYGTHAEIAPDGVAVDGPDP
GAGTLILANPNNPDGRITPAAALRAQLAAGWLVLDEAFADTDPRHSLAGAVREATPLIVL
RSFGKFFGLAGVRLGFVIAPPELIATLRRHLGSWPVSAAAIAIGTAAYADSGWIEAERIR
LAADAAALDQLLRAHGHIPIGACPLFRLIETADAQALFERLARRSILTRPFDYDPRWLRI
GLPADAEALDRLDSALANG