PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ga0059261_0740 FitnessBrowser__Korea:Ga0059261_0740 (540 amino acids)

SeqID: Ga0059261_0740 FitnessBrowser__Korea:Ga0059261_0740
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599167: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ga0059261_0740 FitnessBrowser__Korea:Ga0059261_0740
MSSIRPIVQLDTHEVLNQPPPFEEVNLFTGDRALADAVARAGGARHRERLTSLGARCGSA
EVIDWGVEANRNIPVLESYDRFGQRIDEVRFHPAYHQLMRLGLDSGLASVAWDGTPAGHV
AHAAILFLTGQADSGTSCPMTMTYAAVPALRADEGVAGEWVPRITAGLYDPASRPAAEKA
GVTIGMAMTEKQGGSDVRANTTRAEPAGEAGWYSLTGHKWFCSAPMCDAFLTLAYAQGGL
TCFLVPRWLPDGTRNAGFRVMRLKDKLGDRSNASSEIEYHGALAQRLGEEGRGVATIIQM
VQHTRLDCVIGSAQQMRGALAQALWHTAHRSAFQRRLIDQPAMAAVLADLAVESEAATVL
GLRLAQAFDEADPVARLLTPIAKYWVCKRAPGLVYEAMECHGGGGYIEAGPMPRLFRQSP
LNAIWEGSGNVIALDLLRAIGREPGGVEALNGFLAAQRGRDAAYDAWIGVIDLKSAHEGN
ARLCVEQLALAAQAAVLLGWDSPGADAFCRLRLSPRGSAYGAFDAVVDTRALIERAMPVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory